GEPIS Results: Match to SNCA Save/show results in Excel EST Hits by Libraries Tissue Expression Profiling Extra charts
DesciptionGene Name: SNCA
synuclein, alpha (non A4 component of amyloid precursor)
SpeciesHUMAN    View Mouse Expression Profile
Genome CoordinatesCHR4:90865724-90978457(-)    Launch UCSC Genome Browser
Gene SynonymsHS.169264, HS.76930, MGC110988, NACP, P37840, PARK1, PARK4, PD1, Q13701, Q4JHI3, Q4W5L2, Q6IAU6, SNCA
Gene Common Identifiers
AffymetrixHGU133.204466_s_at, HGU133.204467_s_at, HGU133.207827_x_at, HGU133.211546_x_at, HGU95.37291_r_at, Hu35K.RC_C13990_f_at, Hu35K.RC_F03254_f_at, HuFL68.U46901_at
AgilentA_23_P29939, A_23_P29939
EnsemblENST00000312278, ENST00000336904, ENST00000345009
Entrez Gene6622
GenBankAC093759, AF163864, AY049786, AY547269, AY548761, BC013293, BC108275, CR457058, CR541653, D31839, DQ088379, L08850, L36674, L36675, U46901
RefSeqNM_000345 (GEO) , NM_007308 (GEO
UniGeneHs.271771
UniProtQ4W5L2_HUMAN, SYUA_HUMAN
Gene Orthologs
AffymetrixMGU74.93273_at, Mouse430.1418493_a_at, Mouse430.1431022_at, Mouse430.1436853_a_at, Mu11K.Msa.16275.0_s_at, Mu11K.Msa.17373.0_f_at
AgilentA_51_P509643, A_51_P509643, A_52_P636084
EnsemblENSMUST00000027016, ENSMUST00000027017
Entrez Gene20617
GenBankAF033261, AF044672, AF163865, AF179272, AF179273, AF277451, AK014472, AK156316, BC046764
RefSeqNM_001042451 (GEO) , NM_009221 (GEO
UniGeneMm.17484
UniProtQ3U130_MOUSE, Q9CXF8_MOUSE, Q9EQC3_MOUSE, SYUA_MOUSE
GENE19790 result Chart

Range (bps): Select All Tissues Unselect All Tissues Reset Default Tissues
Tissues Hits Total Normal NorTotal Tumor TumTotal Nor-DEU Tum-DEU Tum/Nor T/N ztest Tiss Spec ztest(Overall) Tiss Spec ztest(Normal)
ADIPOSE_TISSUE 0 15533 0 13834 0 1699 0.00 0.00 1.00 1 1 1
ADRENAL 1 36922 0 19061 1 17861 0.00 55.99 3.20 1.51e-1 9.89e-1 1
BONE 3 52633 3 12668 0 39965 236.82 0.00 0.00 9.99e-1 9.81e-1 2.47e-1
BONE_MARROW 0 48113 0 20311 0 27802 0.00 0.00 1.00 1 1 1
BRAIN 16 705566 16 515939 0 189627 31.01 0.00 0.00 9.92e-1 1.00e+0 10.00e-1
BREAST 2 195527 0 59033 2 136494 0.00 14.65 2.16 1.76e-1 1.00e+0 1
CARTILAGE 0 36300 0 16211 0 20089 0.00 0.00 1.00 1 1 1
CERVIX 0 39427 0 2576 0 36851 0.00 0.00 1.00 1 1 1
COLON 0 221020 0 38203 0 182817 0.00 0.00 1.00 1 1 1
ESOPHAGUS 0 17717 0 87 0 17630 0.00 0.00 1.00 1 1 1
EYE 2 104400 2 52863 0 51537 37.83 0.00 0.00 9.19e-1 10.00e-1 9.89e-1
GENITOURINARY 2 43705 0 9586 2 34119 0.00 58.62 1.40 2.27e-1 9.83e-1 9.78e-1
GI_TRACT 9 43267 1 28590 8 14677 34.98 545.07 15.58 2.48e-4 2.56e-1 9.73e-1
HEAD_N_NECK 0 183837 0 45646 0 138191 0.00 0.00 1.00 1 1 1
HEART 1 21198 1 21198 0 0 47.17 0 0.00 1 9.38e-1 9.40e-1
KIDNEY 0 128658 0 45782 0 82876 0.00 0.00 1.00 1 1 1
LIVER 0 196342 0 108706 0 87636 0.00 0.00 1.00 1 1 1
LUNG 3 219169 0 74876 3 144293 0.00 20.79 3.63 1.06e-1 1.00e+0 1
LYMPHORETICULAR 0 66580 0 19355 0 47225 0.00 0.00 1.00 1 1 1
LYMPH_NODE 0 46659 0 25462 0 21197 0.00 0.00 1.00 1 1 1
MUSCLE 0 65922 0 34215 0 31707 0.00 0.00 1.00 1 1 1
NERVOUS 5 34602 5 34602 0 0 144.50 0 0.00 1 7.44e-1 7.53e-1
OVARY 1 116612 0 8902 1 107710 0.00 9.28 0.25 3.87e-1 10.00e-1 10.00e-1
PANCREAS 11 211295 11 94668 0 116627 116.20 0.00 0.00 10.00e-1 10.00e-1 8.68e-1
PERIPHERAL_NERV 2 21290 2 20092 0 1198 99.54 0.00 0.00 6.35e-1 8.52e-1 8.36e-1
PINEAL_GLAND 0 8534 0 8534 0 0 0.00 0 1.00 1 N/A N/A
PITUITARY_GLAND 0 18649 0 16360 0 2289 0.00 0.00 1.00 1 1 1
PLACENTA 1 219794 1 176385 0 43409 5.67 0.00 0.00 6.90e-1 1.00e+0 1.00e+0
PROSTATE 0 144727 0 60159 0 84568 0.00 0.00 1.00 1 1 1
RETINA 0 23182 0 23182 0 0 0.00 0 1.00 1 1 1
SALIVARY_GLAND 0 13568 0 2647 0 10921 0.00 0.00 1.00 1 1 1
SKIN 12 182179 3 44078 9 138101 68.06 65.17 0.96 5.26e-1 9.97e-1 9.48e-1
SPLEEN 0 49015 0 49015 0 0 0.00 0 1.00 1 1 1
STOMACH 0 107774 0 32681 0 75093 0.00 0.00 1.00 1 1 1
SYNOVIUM 0 2542 0 278 0 2264 0.00 0.00 1.00 1 N/A N/A
TESTIS 1 228165 0 95411 1 132754 0.00 7.53 2.16 1.98e-1 1.00e+0 1
THYMUS 0 3099 0 2958 0 141 0.00 0.00 1.00 1 N/A N/A
THYROID 0 78482 0 18650 0 59832 0.00 0.00 1.00 1 1 1
UTERUS 2 174205 0 10151 2 164054 0.00 12.19 0.31 3.62e-1 1.00e+0 1
VASCULAR 1 49393 1 49393 0 0 20.25 0 0.00 1 9.97e-1 9.97e-1
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